# Items where Year is 2013

**108**.

## Article

Adamcik, Martin and Wilmers, George
(2013)
*The Irrelevant Information Principle for Collective Probabilistic Reasoning.*
Kybernetika.
(In Press)

Adamcik, Martin and Wilmers, George
(2013)
*Probabilistic Merging Operators.*
Logique et Analyse.
(Submitted)

Al-Mohy, Awad H. and Higham, Nicholas J. and Relton, Samuel D.
(2013)
*Computing the Frechet Derivative of the Matrix Logarithm
and Estimating the Condition Number.*
SIAM J. Sci. Comput., 35 (4).
C394 -C410.
ISSN 1095-7197

Ballantyne, John J
(2013)
*On Local Fusion Graphs of Finite Coxeter Groups.*
Journal of Group Theory, 16 (4).
pp. 595-617.
ISSN 1749-9097

Ballantyne, John J. and Rowley, Peter J.
(2013)
*A Note on Computing Involution Centralizers.*
Journal of Symbolic Computation, 54.
pp. 1-8.

Bull, Simon C. and Muldoon, Mark R. and Doig, Andrew J.
(2013)
*Maximising the Size of Non-Redundant Protein Datasets Using Graph Theory.*
PLoS ONE, 8 (2012.6).
e55484.
ISSN 1932-6203

Cotter, Colin and Cotter, Simon and Vialard, Francois-Xavier
(2013)
*Bayesian data assimilation in shape registration.*
Inverse Problems, 29 (4).

Cotter, Simon and Roberts, Gareth and Stuart, Andrew and White, David
(2013)
*MCMC Methods for Functions: Modifying
Old Algorithms to Make Them Faster.*
Statistical Science, 28 (3).
pp. 424-446.

Cotter, Simon and Vejchodsky, Tomas and Erban, Radek
(2013)
*Adaptive Finite Element Method Assisted by Stochastic Simulation of Chemical Systems.*
SIAM Journal on Scientific Computing, 35 (1).

De Pascalis, Riccardo and Napoli, Gaetano and Turzi, Stefano
(2013)
*Growth-induced blisters in a circular tube.*
submitted to Physica D: Nonlinear Phenomena.
(Submitted)

Deadman, Edvin and Higham, Nicholas J. and Ralha, Rui
(2013)
*Blocked Schur Algorithms for Computing the Matrix Square Root.*
Lecture Notes in Computer Science, 7782.
pp. 171-182.

Evatt, G.W and Johnson, P and Duck, P
(2013)
*Optimal regulatory control of early contract termination.*
IMA Journal of Management Mathematics.

Harada, Megumi and Holm, Tara and Ray, Nigel and Williams, Gareth
(2013)
*The equivariant K-theory and cobordism rings of divisive weighted projective spaces.*
Tohoku Mathematical Journal.
(In Press)

Harris, David
(2013)
*A Hyperbolic Augmented Elasto-Plastic Model for Pressure-Dependent Yield.*
Acta Mechanica.
(Submitted)

Heavner, Benjamin D. and Smallbone, Kieran and Price, Nathan D. and Walker, Larry P.
(2013)
*Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.*
Database, bat059.

Higham, Nicholas J. and Lin, Lijing
(2013)
*An Improved Schur--Pade Algorithm for Fractional Powers of a Matrix and their Frechet Derivatives.*
SIAM. J. Matrix Anal. & Appl., 34 (3).
pp. 1341-1360.
ISSN 1095-7162

Khabou, Amal and Demmel, James W. and Grigori, Laura and Gu, Ming
(2013)
*LU FACTORIZATION WITH PANEL RANK REVEALING PIVOTING AND ITS COMMUNICATION AVOIDING VERSION.*
SIAM Journal on Matrix Analysis and Applications, Volume (Issue ).
pp. 1401-1429.
ISSN 0895-4798

Liao, Hua-Xin and Tsao, Chun-Yen and Alam, S. Munir and Muldoon, Mark and Vandergrift, Nathan and Ma, Ben-Jiang and Lu, Xiaozhi and Sutherland, Laura L and Scearce, Richard M. and Bowman, Cindy and Parks, Robert and Chen, Haiyan and Blinn, Julie H and Lapedes, Alan and Watson, Sydeaka and Xia, Shi-Mao and Foulger, Andrew and Hahn, Beatrice H and Shaw, George M and Swanstrom, Ron and Montefiori, David C and Gao, Feng and Haynes, Barton F and Korber, Bette
(2013)
*Antigenicity and Immunogenicity of Transmitted/Founder, Consensus, and Chronic Envelope Glycoproteins of Human Immunodeficiency Virus Type 1.*
Journal of Virology, 87 (8).
pp. 4185-4201.
ISSN 0022-538X

Mansuroglu, Nil and Stöhr, Ralph
(2013)
*ON THE DIMENSION OF PRODUCTS OF HOMOGENEOUS
SUBSPACES IN FREE LIE ALGEBRAS.*
Internat. J. Algebra Comput. 23 (2013), no. 1, 205-213, 23 (1).
pp. 205-213.

Montaldi, James and Rodriguez-Olmos, Miguel
(2013)
*A sufficient condition for the existence of Hamiltonian bifurcations with continuous isotropy.*
Acta Mathematica Vietnamica, 38 (1).
pp. 11-19.
ISSN 0251-4184

Montaldi, James and Steckles, Katrina
(2013)
*Classification of symmetry groups for planar n-body choreographies.*
Forum of Mathematics, Sigma, 1.
ISSN 2050-5094
(In Press)

Montaldi, James and Steckles, Katrina
(2013)
*Classification of symmetry groups for planar n-body choreographies.*
Forum of Mathematics: Sigma, 1 (2013, e5).
pp. 1-55.
ISSN 1749-9097

Montaldi, James and Tokieda, Tadshi
(2013)
*Deformation of geometry and bifurcations of vortex rings.*
Springer Proceedings in Mathematics & Statistics, 35.
pp. 335-370.
ISSN 2194-1009

Mulliner, Emma and Smallbone, Kieran and Maliene, Vida
(2013)
*An assessment of sustainable housing affordability using a multiple criteria decision making method.*
Omega, 41 (2).
pp. 270-279.

Nakatsukasa, Yuji and Higham, Nicholas J.
(2013)
*Stable and Efficient Spectral Divide and Conquer Algorithms for the Symmetric Eigenvalue Decomposition and the SVD.*
SIAM J. Sci. Comput., 35 (3).
A1325-A1349.
ISSN 1095-7197

Parnell, William J. and Shearer, Tom
(2013)
*Antiplane elastic wave cloaking using metamaterials, homogenization and hyperelasticity.*
Wave Motion, 50.
pp. 1140-1152.
ISSN 0165-2125

Parrish, Nicholas F and Gao, Feng and Li, Hui and Giorgi, Elena E and Barbian, Hannah J and Parrish, Erica H and Zajic, Lara and Iyer, Shilpa S and Decker, Julie M and Kumar, Amit and Hora, Bhavna and Berg, Anna and Cai, Fangping and Hopper, Jennifer and Denny, Thomas N and Ding, Hairao and Ochsenbauer, Christina and Kappes, John C and Galimidi, Rachel P and West, Anthony P Jr and Bjorkman, Pamela J and Wilen, Craig B and Doms, Robert W and O'Brien, Meagan and Bhardwaj, Nina and Borrow, Persephone and Haynes, Barton F and Muldoon, Mark and Theiler, James P and Korber, Bette and Shaw, George M and Hahn, Beatrice H
(2013)
*Phenotypic properties of transmitted founder HIV-1.*
PNAS, 110 (17).
pp. 6626-6633.
ISSN 1091-6490

Qusay Soad Abdul-Aziz, Al-Zamil
(2013)
*Hankel Determinant Structure of the Rational Solutions for Fifth PainlevÃ© Equation.*
APPLIED MATHEMATICAL SCIENCES, Vol. 7 (No. 9).
pp. 445-452.
ISSN 1312-885X (print) ISSN 1314-7552 (online)

Shearer, Tom and Abrahams, I. David and Parnell, William J. and Daros, Carlos H.
(2013)
*Torsional wave propagation in a pre-stressed hyperelastic annular circular cylinder.*
The Quarterly Journal of Mechanics and Applied Mathematics, 66 (4).
pp. 465-487.

Silvester, David and Liao, Qifeng
(2013)
*Robust Stabilized Stokes Approximation Methods for Highly Stretched Grids.*
IMA Journal of Numerical Analysis, 33.
pp. 413-431.
ISSN 0272-4979

Smallbone, Kieran and Mendes, Pedro
(2013)
*Large-Scale Metabolic Models: From Reconstruction to Differential Equations.*
Industrial Biotechnology, 9 (4).
pp. 179-184.

Smallbone, Kieran and Messiha, Hanan L. and Carroll, Kathleen M. and Winder, Catherine L. and Malys, Naglis and Dunn, Warwick B. and Murabito, Ettore and Swainston, Neil and Dada, Joseph O. and Khan, Farid and Pir, Pınar and Simeonidis, Evangelos and Spasić, Irena and Wishart, Jill and Weichart, Dieter and Hayes, Neil W. and Jameson, Daniel and Broomhead, David S. and Oliver, Stephen G. and Gaskell, Simon J. and McCarthy, John E.G. and Paton, Norman W. and Westerhoff, Hans V. and Kell, Douglas B. and Pendes, Pedro
(2013)
*A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.*
FEBS Letters, 587 (17).
pp. 2832-2841.

Stanford, Natalie J. and Lubitz, Timo and Smallbone, Kieran and Klipp, Edda and Mendes, Pedro and Liebermeister, Wolfram
(2013)
*Systematic construction of kinetic models from genome-scale metabolic networks.*
PLoS ONE, 8 (11).
e79195.

Thiele, Ines and Swainston, Neil and Fleming, Ronan M.T. and Hoppe, Andreas and Sahoo, Swagatika and Aurich, Maike K. and Haraldsdottir, Hulda and Mo, Monica L. and Rolfsson, Ottar and Stobbe, Miranda D. and Thorleifsson, Stefan G. and Agren, Rasmus and Bölling, Christian and Bordel, Sergio and Chavali, Arvind K. and Dobson, Paul D. and Dunn, Warwick B. and Endler, Lukas and Hala, David and Hucka, Michael and Jameson, Daniel and Jamshidi, Neema and Jonsson, Jon J. and Juty, Nick and Keating, Sarah and Nookaew, Intawat and Le Novère, Nicolas and Malys, Naglis and Mazein, Alexander and Papin, Jason A. and Price, Nathan D. and Selkov, Sr., Evgeni and Sigurdsson, Martin I. and Simeonidis, Evangelos and Sonnenschein, Nikolaus and Smallbone, Kieran and Sorokin, Antony and van Beek, Johannes H.G.M. and Weichart, Dieter and Goryanin, Igor and Neilsen, Jens and Westerhoff, Hans V. and Kell, Douglas B, and Mendes, Pedro M. and Palsson, Bernhard Ø.
(2013)
*A community-driven global reconstruction of human metabolism.*
Nature Biotechnology, 31 (5).
pp. 419-425.

Tisseur, Françoise and Zaballa, Ion
(2013)
*Triangularizing Quadratic Matrix Polynomials.*
SIAM J. MATRIX ANAL. APPL., 34 (2).
pp. 312-337.
ISSN 1749-9097

## MIMS Preprint

Kovács, L. G. and Stöhr, Ralph
(2013)
*Free centre-by-metabelian Lie algebras in characteristic 2.*
[MIMS Preprint]

Akian, Marianne and Gaubert, Stéphane and Sharify, Meisam
(2013)
*Log-majorization of the moduli of the eigenvalues of a matrix polynomial by tropical roots.*
[MIMS Preprint]

Alexandrou, Maria and Stöhr, Ralph
(2013)
*FREE CENTRE-BY-(ABELIAN-BY-EXPONENT 2) GROUPS.*
[MIMS Preprint]

Amelunxen, Dennis and Lotz, Martin and Mccoy, Michael B. and Tropp, Joel A.
(2013)
*Living on the edge: A geometric theory of phase transitions in convex optimization.*
[MIMS Preprint]

Aprahamian, Mary and Higham, Nicholas J.
(2013)
*The Matrix Unwinding Function, with an Application to Computing the Matrix Exponential.*
[MIMS Preprint]

Aprahamian, Mary and Higham, Nicholas J.
(2013)
*The Matrix Unwinding Function, with an Application to Computing the Matrix Exponential.*
[MIMS Preprint]

Aprahamian, Mary and Higham, Nicholas J.
(2013)
*The Matrix Unwinding Function, with an Application to Computing the Matrix Exponential.*
[MIMS Preprint]

*The Matrix Unwinding Function, with an Application to Computing the Matrix Exponential.*
[MIMS Preprint]

Aubert, Anne-Marie and Baum, Paul and Plymen, Roger and Solleveld, Maarten
(2013)
*Depth and the local Langlands correspondence.*
[MIMS Preprint]

Aubert, Anne-Marie and Baum, Paul and Plymen, Roger and Solleveld, Maarten
(2013)
*Depth and the local Langlands correspondence.*
[MIMS Preprint]

Aubert, Anne-Marie and Baum, Paul and Plymen, Roger and Solleveld, Maarten
(2013)
*Geometric structure in smooth dual and local Langlands conjecture.*
[MIMS Preprint]

Aubert, Anne-Marie and Baum, Paul and Plymen, Roger and Solleveld, Maarten
(2013)
*Geometric structure in smooth dual and local Langlands conjecture.*
[MIMS Preprint]

Aubert, Anne-Marie and Baum, Paul and Plymen, Roger and Solleveld, Maarten
(2013)
*On the local Langlands correspondence for non-tempered representations.*
[MIMS Preprint]

Aubert, Anne-Marie and Baum, Paul and Plymen, Roger and Solleveld, Maarten
(2013)
*On the local Langlands correspondence for non-tempered representations.*
[MIMS Preprint]

Aubert, Anne-Marie and Baum, Paul and Plymen, Roger and Solleveld, Maarten
(2013)
*The local Langlands correspondence for inner forms of SL_n.*
[MIMS Preprint]

Ballantyne, John J and Bates, Christopher J and Rowley, Peter J
(2013)
*The Maximal Subgroups of E_7(2).*
[MIMS Preprint]

Brodzki, Jacek and Niblo, Graham and Plymen, Roger and Wright, Nick
(2013)
*The Dirac operator and the limit-of-discrete-series for the universal cover of SL_2(R).*
[MIMS Preprint]

Brodzki, Jacek and Niblo, Graham and Plymen, Roger and Wright, Nick
(2013)
*K-theory and limit-of-discrete-series for the universal cover of SL_2(R).*
[MIMS Preprint]

Brodzki, Jacek and Niblo, Graham and Plymen, Roger and Wright, Nick
(2013)
*The spectrum of the Dirac operator for the universal cover of SL_2(R).*
[MIMS Preprint]

De Teran, Fernando and Dopico, Froilan M. and Mackey, D. Steven
(2013)
*Spectral equivalence of matrix polynomials
and the index sum theorem.*
[MIMS Preprint]

De Teran, Fernando and Lippert, Ross and Nakatsukasa, Yuji and Noferini, Vanni
(2013)
*Flanders' theorem for many matrices under commutativity assumptions.*
[MIMS Preprint]

De Teran, Fernando and Nakatsukasa, Yuji and Noferini, Vanni
(2013)
*Flandersâ�� theorem for many matrices under commutativity assumptions.*
[MIMS Preprint]

Dingle, Nicholas J.
(2013)
*Inexact Sparse Matrix-Vector Products in the Calculation of Passage Time Distributions in Large Semi-Markov Models.*
[MIMS Preprint]

Druskin, Vladimir and Güttel, Stefan and Knizhnerman, Leonid
(2013)
*Near-optimal perfectly matched layers for indefinite Helmholtz problems.*
[MIMS Preprint]

Druskin, Vladimir and Güttel, Stefan and Knizhnerman, Leonid
(2013)
*Near-optimal perfectly matched layers for indefinite Helmholtz problems.*
[MIMS Preprint]

Druskin, Vladimir and Güttel, Stefan and Knizhnerman, Leonid
(2013)
*Near-optimal perfectly matched layers for indefinite Helmholtz problems.*
[MIMS Preprint]

Frommer, Andreas and Güttel, Stefan and Schweitzer, Marcel
(2013)
*Efficient and stable Arnoldi restarts for matrix functions based on quadrature.*
[MIMS Preprint]

Frommer, Andreas and Güttel, Stefan and Schweitzer, Marcel
(2013)
*Efficient and stable Arnoldi restarts for matrix functions based on quadrature.*
[MIMS Preprint]

Frommer, Andreas and Güttel, Stefan and Schweitzer, Marcel
(2013)
*Efficient and stable Arnoldi restarts for matrix functions based on quadrature.*
[MIMS Preprint]

Grigori, Laura and Jacquelin, Mathias and Khabou, Amal
(2013)
*Multilevel communication optimal LU and QR factorizations for hierarchical platforms.*
[MIMS Preprint]

Grigori, Laura and Jacquelin, Mathias and Khabou, Amal
(2013)
*Multilevel communication optimal LU and QR factorizations for hierarchical platforms.*
[MIMS Preprint]

Grigori, Laura and Jacquelin, Mathias and Khabou, Amal
(2013)
*Performance predictions of multilevel communication optimal LU and QR factorizations on hierarchical platforms.*
[MIMS Preprint]

Güttel, Stefan and Klein, Georges
(2013)
*Efficient high-order rational integration and deferred correction with equispaced data.*
[MIMS Preprint]

Güttel, Stefan and Pestana, Jen
(2013)
*Some observations on weighted GMRES.*
[MIMS Preprint]

Güttel, Stefan and Van Beeumen, Roel and Meerbergen, Karl and Michiels, Wim
(2013)
*NLEIGS: A class of robust fully rational Krylov methods for nonlinear eigenvalue problems.*
[MIMS Preprint]

Higham, Nicholas J.
(2013)
*Matrix Computations in Basic on a Microcomputer.*
[MIMS Preprint]

Higham, Nicholas J. and Lijing, Lin
(2013)
*Matrix Functions: A Short Course.*
[MIMS Preprint]

Higham, Nicholas J. and Lin, Lijing
(2013)
*An Improved Schur--Pade Algorithm for Fractional Powers of a Matrix and their Frechet Derivatives.*
[MIMS Preprint]

Higham, Nicholas J. and Lin, Lijing
(2013)
*An Improved Schur--PadÃ© Algorithm for Fractional Powers of a Matrix and their FrÃ©chet Derivatives.*
[MIMS Preprint]

Higham, Nicholas J. and Relton, Samuel D.
(2013)
*Estimating the Condition Number of the Frechet Derivative
of a Matrix Function.*
[MIMS Preprint]

Higham, Nicholas J. and Relton, Samuel D.
(2013)
*Higher Order Frechet Derivatives of Matrix Functions and the Level-2 Condition Number.*
[MIMS Preprint]

Hook, JL
(2013)
*Smoothing non-smooth systems with low-pass filters.*
[MIMS Preprint]

Hook, JL
(2013)
*Smoothing non-smooth systems with low-pass filters.*
[MIMS Preprint]

Hook, James and Dingle, Nick
(2013)
*Performance Analysis of Asynchronous Parallel Jacobi.*
[MIMS Preprint]

Jerbi, Karim and Lionheart, William and Vauhkonen, Paivi and Vauhkonen, Marko
(2013)
*Sensitivity matrix and reconstruction algorithm for EIT assuming axial uniformity.*
[MIMS Preprint]

Kannan, Ramaseshan and Hendry, Stephen and Higham, Nicholas J. and Tisseur, Francoise
(2013)
*Detecting the Causes of Ill-Conditioning in Structural Finite Element Models.*
[MIMS Preprint]

Khabou, Amal and Demmel, James W. and Grigori, Laura and Gu, Ming
(2013)
*LU FACTORIZATION WITH PANEL RANK REVEALING PIVOTING AND ITS COMMUNICATION AVOIDING VERSION.*
[MIMS Preprint]

Khukhro, E. I.
(2013)
*Counterexamples to a rank analogue of the Shepherd--Leedham-Green--McKay theorem on finite $p$-groups of maximal class.*
[MIMS Preprint]

Khukhro, E. I.
(2013)
*Problems of bounding the $p$-length and Fitting height of finite soluble groups.*
[MIMS Preprint]

Khukhro, E. I.
(2013)
*Rank and order of a finite group admitting a Frobenius group of automorphisms.*
[MIMS Preprint]

Khukhro, E. I. and Makarenko, N. Yu.
(2013)
*Finite $p$-groups with a Frobenius group of automorphisms whose kernel is a cyclic $p$-group.*
[MIMS Preprint]

Khukhro, E. I. and Makarenko, N. Yu.
(2013)
*Finite groups and Lie rings with a metacyclic
Frobenius group of automorphisms.*
[MIMS Preprint]

Khukhro, E. I. and Shumyatsky, P.
(2013)
*Nonsoluble and non-$p$-soluble length of finite groups.*
[MIMS Preprint]

Khukhro, E. I. and Shumyatsky, P.
(2013)
*Words and pronilpotent subgroups in profinite groups.*
[MIMS Preprint]

Kuber, Amit
(2013)
*Grothendieck Rings of Theories of Modules.*
[MIMS Preprint]

Ledger, Paul D and Lionheart, William RB
(2013)
*Characterising the shape and material properties of hidden targets from magnetic induction data.*
[MIMS Preprint]

Ledger, Paul D and Lionheart, William RB
(2013)
*Characterising the shape and material properties of hidden targets from magnetic induction data.*
[MIMS Preprint]

Ledger, Paul D and Lionheart, William RB
(2013)
*The perturbation of electromagnetic fields at distances that are large compared to the objectâ��s size.*
[MIMS Preprint]

Lin, Lijing and Higham, Nicholas J. and Pan, Jianxin
(2013)
*Covariance Structure Regularization via Entropy Loss Function.*
[MIMS Preprint]

Mansuroğlu, Nil and Stöhr, Ralph
(2013)
*Free centre-by-metabelian Lie rings.*
[MIMS Preprint]

Mendes, Sergio and Plymen, Roger
(2013)
*L-packets and formal degrees for SL_2(K) with K a local function field of characteristic 2.*
[MIMS Preprint]

Noferini, Vanni and Poloni, Federico
(2013)
*Duality of matrix pencils and linearizations.*
[MIMS Preprint]

Noferini, Vanni and Poloni, Federico
(2013)
*Duality of matrix pencils and linearizations.*
[MIMS Preprint]

Noferini, Vanni and Poloni, Federico
(2013)
*Duality of matrix pencils and linearizations.*
[MIMS Preprint]

Powell, Catherine E. and Gordon, Andrew D.
(2013)
*A Preconditioner for Fictitious Domain Formulations of Elliptic PDEs on Uncertain Parameterized Domains.*
[MIMS Preprint]

## Book Section

Dodson, CTJ and Sampson, WW
(2013)
*Dimensionality reduction for classification of stochastic fibre radiographs.*
In:
Geometric Science of Information GSI2013.
Lecture Notes in Computer Science, 8085
(8085).
Springer, Heidelberg, pp. 158-165.
ISBN ISBN 978-3-642-40020-9
(In Press)

Smallbone, Kieran and Stanford, Natalie J.
(2013)
*Kinetic modelling of metabolic pathways: Application to serine biosynthesis.*
In:
Systems Metabolic Engineering: Methods and Protocols.
Methods in Molecular Biology, 985
.
Humana Press, pp. 113-121.

## Conference or Workshop Item

Andreas, Papayiannis and Paul, Johnson and Dmitry, Yumashev and Peter, Duck
(2013)
*Continuous-Time Revenue Managment in Carparks - Part two: Refining the PDE.*
In: 2nd International Conference on Operations Research and Enterprise Systems, 16-18 February, Barcelona, Spain.

Plymen, Roger
(2013)
*The local Langlands correspondence for inner forms of SL_n.*
In: Warwick Number Theory Symposium 2012-2013, 29 Apr - 03 May 2013, University of Warwick, UK.
(Unpublished)

## Thesis

Blair, J.W.
(2013)
*Real option analysis in resilient energy networks.*
Masters thesis, Manchester Institute for Mathematical Sciences, The University of Manchester.

Crinion, Tim
(2013)
*Chamber graphs of some geometries related to the Petersen graph.*
Doctoral thesis, Manchester Institute for Mathematical Sciences, The University of Manchester.

Nava Gaxiola, Citlalitl
(2013)
*Point vortices on the hyperboloid.*
Doctoral thesis, Manchester Institute for Mathematical Sciences, The University of Manchester.

Tregidgo, Henry F.J.
(2013)
*Implementation and Analysis of Katsevich Reconstruction for Helical Scan CT.*
Masters thesis, The University of Manchester.