Items where Author is "Muldoon, Mark"

Das, Rajenki and Muldoon, Mark and Lunt, Mark and McBeth, John and Yimer, Belay Birlie and House, Thomas (2023) Modelling and classifying joint trajectories of self-reported mood and pain in a large cohort study. PLOS Digital Health, 2 (3). e0000204. ISSN 2767-3170 (In Press)

Giorgi, Elena E. and Balachandran, Harikrishnan and Muldoon, Mark and Letvin, Norman L. and Haynes, Barton F. and Korber, Bette T. and Santra, Sampa (2014) Cross-reactive potential of human T-lymphocyte responses in HIV-1 infection. Vaccine, 32 (31). pp. 3995-4000. ISSN 0264-410X

Parrish, Nicholas F and Gao, Feng and Li, Hui and Giorgi, Elena E and Barbian, Hannah J and Parrish, Erica H and Zajic, Lara and Iyer, Shilpa S and Decker, Julie M and Kumar, Amit and Hora, Bhavna and Berg, Anna and Cai, Fangping and Hopper, Jennifer and Denny, Thomas N and Ding, Hairao and Ochsenbauer, Christina and Kappes, John C and Galimidi, Rachel P and West, Anthony P Jr and Bjorkman, Pamela J and Wilen, Craig B and Doms, Robert W and O'Brien, Meagan and Bhardwaj, Nina and Borrow, Persephone and Haynes, Barton F and Muldoon, Mark and Theiler, James P and Korber, Bette and Shaw, George M and Hahn, Beatrice H (2013) Phenotypic properties of transmitted founder HIV-1. PNAS, 110 (17). pp. 6626-6633. ISSN 1091-6490

Liao, Hua-Xin and Tsao, Chun-Yen and Alam, S. Munir and Muldoon, Mark and Vandergrift, Nathan and Ma, Ben-Jiang and Lu, Xiaozhi and Sutherland, Laura L and Scearce, Richard M. and Bowman, Cindy and Parks, Robert and Chen, Haiyan and Blinn, Julie H and Lapedes, Alan and Watson, Sydeaka and Xia, Shi-Mao and Foulger, Andrew and Hahn, Beatrice H and Shaw, George M and Swanstrom, Ron and Montefiori, David C and Gao, Feng and Haynes, Barton F and Korber, Bette (2013) Antigenicity and Immunogenicity of Transmitted/Founder, Consensus, and Chronic Envelope Glycoproteins of Human Immunodeficiency Virus Type 1. Journal of Virology, 87 (8). pp. 4185-4201. ISSN 0022-538X

Santra, Sampa and Muldoon, Mark and Watson, Sydeaka and Buzby, Adam and Balachandran, Harikrishnan and Carlson, Kevin R. and Mach, Linh and Kong, Wing-Pui and McKee, Krishna and Yang, Zhi-Yong and Rao, Srinivas S. and Mascola, John R. and Nabel, Gary J. and Korber, Bette T, and Letvin, Norman L. (2012) Breadth of cellular and humoral immune responses elicited in rhesus monkeys by multi-valent mosaic and consensus immunogens. Virology, 248 (2). pp. 121-127. ISSN 0042-6822

Broomhead, David and Huke, Jeremy and Montaldi, James and Muldoon, Mark (2012) Finite-dimensional behaviour and observability in a randomly forced PDE. Dynamical Systems, 27. pp. 57-73. ISSN 1468�9375

Muldoon, Mark and Huke, Jeremy and Smallbone, Kieran (2011) Dave Broomhead's 60th Birthday. Mathematics Today, 47 (2). pp. 68-69.

Kirchherr, Jennifer L. and Hamilton, Jennifer and Lu, Xiaozhi and Gnanakaran, S. and Muldoon, Mark and Daniels, Marcus and Kasongo, Webster and Chalwe, Victor and Mulenga, Chanda and Mwananyanda, Lawrence and Musonda, Rosemary M. and Yuan, Xing and Montefiori, David C. and Korber, Bette T. and Haynes, Barton F. and Gao, Feng (2011) Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120. Virology, 409 (2). pp. 163-174.

Isaac, Andrew D. and Muldoon, Mark and Brown, Keri A. and Brown, Terence A. (2010) Genetic analysis of wheat landraces enables the location of the first agricultural sites in Italy to be identified. Journal of Archaeological Science, 37 (5). pp. 950-956. ISSN 0305-4403 (In Press)

Barouch, Dan H. and O'Brien, Kara L. and Simmons, Nathaniel L. and King, Sharon L. and Abbink, Peter and Maxfield, Lori F. and Sun, Ying-Hua and La Porte, Annalena and Riggs, Ambryice M. and Lynch, Diana M. and Clark, Sarah L. and Backus, Katherine and Perry, James R. and Seaman, Michael S. and Carville, Angela and Mansfield, Keith G. and Szinger, James J. and Fischer, Will and Muldoon, Mark and Korber, Bette (2010) Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys. Nature Medicine, 16 (3). pp. 319-323. ISSN 1546-170X

Santra, Sampa and Liao, Hua-Xin and Zhang, Ruijin and Muldoon, Mark and Watson, Sydeaka and Fischer, Will and Theiler, James and Szinger, James and Balachandran, Harikrishnan and Buzby, Adam and Quinn, David and Parks, Robert J. and Tsao, Chun-Yen and Carville, Angela and Mansfield, Keith G. and Pavlakis, George N. and Felber, Barbara K. and Haynes, Barton F. and Korber, Bette T. and Letvin, Norman L. (2010) Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys. Nature Medicine, 16 (3). pp. 324-328. ISSN 1546-170X

Cehajic-Kapetanovic, Jasmina and Bishop, Paul N. and Liyanage, Sidath and King, Trevor and Muldoon, Mark and Wearne, Ian M. (2010) A novel Ocular Anaesthetic Scoring System, OASS, tool to measure both motor and sensory function following local anaesthesia. British Journal of Ophthalmology, 94 (1). pp. 28-32. ISSN 0007-1161

Muldoon, Mark (2009) External Examiners. Mathematics Today. pp. 42-43.

Santra, Sampa and Korber, Bette T. and Muldoon, Mark and Barouch, Dan H. and Nabel, Gary J. and Gao, Feng and Hahn, Beatrice H. and Haynes, Barton F. and Letvin, Norman L. (2008) A centralized gene-based HIV-1 vaccine elicits broad cross-clade cellular immune responses in rhesus monkeys. Proceedings of the National Academy of Sciences of the USA, 105 (30). pp. 10489-10494. ISSN 0027-8424

Frahm, Nicole and Kaufmann, Daniel E. and Yusim, Karina and Muldoon, Mark and Kesmir, Can and Linde, Caitlyn H. and Fischer, Will and Allen, Todd M. and Li, Bin and McMahon, Ben H. and Faircloth, Kellie L. and Hewitt, Hannah S. and Mackey, Elizabeth W. and Miura, Toshiyuki and Khatri, Ashok and Wolinsky, Steven and McMichael, Andrew and Funkhouser, Robert K. and Walker, Bruce D. and Brander, Christian and Korber, Bette T. (2007) Increased Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses. Journal of Immunology, 179 (10). pp. 6638-6650. ISSN 0022-1767

Cai, Yu-Dong and Jen, Chi-Hung and Qian, Jiang and Qian, ZiLiang and Muldoon, Mark (2007) Prediction of regulatory networks: identification of transcription factor-target relationship from gene ontology information and gene expression data. [MIMS Preprint]

Cai, Yu-Dong and Muldoon, Mark (2007) Metabolic Pathway Modeling by Using the Nearest Neighbor Algorithm. [MIMS Preprint]

Rong, Rong and Gnanakaran, S. and Decker, Julie M. and Bibollet-Ruche, Frederic and Taylor, Jesse and Sfakianos, Jeffrey N. and Mokili, John L. and Muldoon, Mark and Mulenga, Joseph and Allen, Susan and Hahn, Beatrice H. and Shaw, George M. and Blackwell, Jerry L. and Korber, Bette T. and Hunter, Eric and Derdeyn, Cynthia A. (2007) Unique Mutational Patterns in the Envelope α2 Amphipathic Helix and Acquisition of Length in gp120 Hypervariable Domains Are Associated with Resistance to Autologous Neutralization of Subtype C Human Immunodeficiency Virus Type 1. Journal of Virology, 81 (11). pp. 5658-5668. ISSN 0022-538X

Kothe, Denise L. and Decker, Julie M. and Li, Yingying and Weng, Zhiping and Bibollet-Ruche, Frederic and Zammit, Kenneth P. and Slazar, Maraia G. and Chen, Yalu and Salazar-Gonzalez, Jesus F. and Moldoveanu, Zina and Mestecky, Jiri and Gao, Feng and Haynes, Barton F. and Shaw, George M. and Muldoon, Mark and Korber, Bette T. M. and Hahn, Beatrice H. (2007) Antigenicity and immunogenicity of HIV-1 consensus subtype B envelope glycoproteins. Virology, 360 (1). pp. 218-234. ISSN 0042-6822 (In Press)

Weaver, Eric A. and Lu, Zhongjing and Camacho, Zenadio T. and Moukdar, Fatiha and Liao, Hua-Xin and Ma, Ben-Jiang and Muldoon, Mark and Theiler, James and Nabel, Gary J. and Letvin, Norman L. and Korber, Bette T. and Hahn, Beatrice H. and Haynes, Barton F. and Gao, Feng (2006) Cross-Subtype T-Cell Immune Responses Induced by a Human Immunodeficiency Virus Type 1 Group M Consensus Env Immunogen. Journal of Virology, 80 (14). pp. 6745-6756. ISSN 0022-538X

Derdeyn, Cynthia A. and Decker, Julie M. and Bibollet-Ruche, Frederic and Mokili, John L. and Muldoon, Mark and Denham, Scott A. and Heil, Marintha L. and Kasolo, Francis and Musonda, Rosemary and Hahn, Beatrice H. and Shaw, George M. and Korber, Bette T. and Allen, Susan and Hunter, Eric (2004) Envelope-Constrained Neutralization-Sensitive HIV-1 After Heterosexual Transmission. Science, 303. pp. 2019-2022. ISSN 0036-8075

Yusim, Karina and Peters, Martine and Pybus, Oliver and Bhattacharya, Tanmoy and Delaporte, Eric and Mulanaga, Claire and Muldoon, Mark and Theiler, James and Korber, Bette (2001) Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution. Philosophical Transactions of the Royal Society of London, B, 356 (1410). pp. 855-866. ISSN 0962-8436

Jin, Xia and Roberts, Caroline G. P. and Nixon, Douglas F. and Cao, Yunzhen and Ho, David D. and Walker, Bruce D. and Muldoon, Mark and Korber, Bette T. M. and Koup, Richard A. and ARIEL Project Investigators, the (1998) Longitudinal and Cross-Sectional Analysis of Cytotoxic T Lymphocyte (CTL) Responses and their Relationship to Vertical HIV Transmission. Journal of Infectious Diseases, 178 (5). pp. 1317-1326. ISSN 0022-1899

Cao, Yunzhen and Krogstad, Paul and Korber, Bette T. and Koup, Richard A. and Muldoon, Mark and Macken, Catherine and Song, Jia-Li and Jin, Zhanqun and Zhao, Jla-Qi and Clapp, Sheila and Chen, Irvin S. Y. and Ho, David D. and Ammann, Arthur J. and Ariel Project Investigators, the (1997) Maternal HIV-1 viral load and vertical transmission of infection: The Ariel Project for the prevention of HIV transmission from mother to infant. Nature Medicine, 3 (5). pp. 549-552. ISSN 1078-8956

Muldoon, Mark (1989) Ghosts of Order on the Frontier of Chaos. Doctoral thesis, California Institute of Technology.