Items where Author is "Mendes, Pedro"

Article

Villaverde, Alejandro F. and Henriques, David and Smallbone, Kieran and Bongard, Sophia and Schmid, Joachim and Cicin-Sain, Damjan and Crombach, Anton and Saez-Rodriguez, Julio and Mauch, Klaus and Balsa-Canto, Eva and Mendes, Pedro and Jaeger, Johannes and Banga, Julio (2015) BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Systems Biology, 9 (8).

Stanford, Natalie J. and Lubitz, Timo and Smallbone, Kieran and Klipp, Edda and Mendes, Pedro and Liebermeister, Wolfram (2013) Systematic construction of kinetic models from genome-scale metabolic networks. PLoS ONE, 8 (11). e79195.

Smallbone, Kieran and Mendes, Pedro (2013) Large-Scale Metabolic Models: From Reconstruction to Differential Equations. Industrial Biotechnology, 9 (4). pp. 179-184.

Lee, Dave and Smallbone, Kieran and Dunn, Warwick B. and Murabito, Ettore and Winder, Catherine L. and Kell, Douglas B. and Mendes, Pedro and Swainston, Neil (2012) Improving metabolic flux predictions using absolute gene expression data. BMC Systems Biology, 6 (73).

Heavner, Benjamin D and Smallbone, Kieran and Barker, Brandon and Mendes, Pedro and Walker, Larry P (2012) Yeast 5 - an Expanded Reconstruction of the Saccharomyces Cerevisiae Metabolic Network. BMC Systems Biology, 6 (55).

Lee, Dave and Smallbone, Kieran and Dunn, Warwick B. and Murabito, Ettore and Winder, Catherine L. and Kell, Douglas B. and Mendes, Pedro and Swainston, Neil (2012) Improving metabolic flux predictions using absolute gene expression data. BMC Systems Biology. (In Press)

Davies, Oluwafemi and Mendes, Pedro and Smallbone, Kieran and Malys, Naglis (2012) Characterisation of multiple substrate-specific (d)ITP/(d)XTPase and modelling of deaminated purine nucleotide metabolism. BMB Reports, 45 (4). pp. 259-264.

Heavner, Benjamin D and Smallbone, Kieran and Barker, Brandon and Mendes, Pedro and Walker, Larry P (2012) Yeast 5 � an Expanded Reconstruction of the Saccharomyces Cerevisiae Metabolic Network. BMC Systems Biology. (In Press)

Davies, Oluwafemi and Mendes, Pedro and Smallbone, Kieran and Malys, Naglis (2011) Characterisation of multiple substrate-specific (d)ITP/(d)XTPase and modelling of deaminated purine nucleotide metabolism. BMB Reports, 44 (11). (In Press)

Swainston, Neil and Smallbone, Kieran and Mendes, Pedro and Kell, Douglas B. and Paton, Norman W. (2011) The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. Journal of Integrative Bioinformatics, 8 (2). p. 186.

Swainston, Neil and Golebiewski, Martin and Messiha, Hanan L. and Malys, Naglys and Kania, Renate and Kengne, Sylvestre and Krebs, Olga and Mir, Saqib and Sauer-Danzwith, Heidrun and Smallbone, Kieran and Weidemann, Andreas and Wittig, Ulrike and Kell, Douglas B. and Mendes, Pedro and Müller, Wolfgang and Paton, Norman W. and Rojas, Isabel (2010) Enzyme kinetics informatics: from instrument to browser. FEBS Journal, 277. pp. 3769-3779.

Smallbone, Kieran and Simeonidis, Evangelos and Swainston, Neil and Mendes, Pedro (2010) Towards a genome-scale kinetic model of cellular metabolism. BMC Systems Biology, 4. p. 6.

Smallbone, Kieran and Simeonidis, Evangelos and Swainston, Neil and Mendes, Pedro (2009) Towards a genome-scale kinetic model of cellular metabolism. BMC Systems Biology. (Submitted)

MIMS Preprint

Lee, Dave and Smallbone, Kieran and Dunn, Warwick B. and Murabito, Ettore and Winder, Catherine L. and Kell, Douglas B. and Mendes, Pedro and Swainston, Neil (2012) Constraining flux balance analysis with genome-scale data. [MIMS Preprint]

Stanford, Natalie J. and Smallbone, Kieran and Mendes, Pedro (2012) Letting the flux define the kinetics: using a single steady state to predict network behaviour under diverse stress conditions. [MIMS Preprint]

Book Section

Mendes, Pedro and Smallbone, Kieran and Stanford, Natalie (2011) Kinetic modelling of large-scale metabolic networks. In: Proceedings of the 9th International Conference on Computational Methods in Systems Biology. Institut Henri Poincaré, Paris, France. ISBN 978-1-4503-0817-5